Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0802037 with 20 members (DNA-directed RNA polymerase subunit beta)

Eukaryota / Viridiplantae / Streptophyta / Streptophytina / Embryophyta / Tracheophyta / Euphyllophyta /

... /

Spermatophyta / Magnoliopsida / Mesangiospermae / Liliopsida / Petrosaviidae / commelinids /

Poaceae /

Completeness score: 0.76

‹

Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

73.3%

This HOG has 58 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E1027625	LUCA	926		63.5%	5
HOG:E0802559	Eukaryota	786		61.7%	5
HOG:E0314403	Embryophyta	142		48.6%	5
HOG:E1027494	LUCA	108		82.4%	4
HOG:E0805727	Eukaryota	89		25.8%	4
HOG:E0315921	Embryophyta	13		30.8%	4
HOG:E0252620	malvids	8		37.5%	4
HOG:E0820148	Eukaryota	5		100.0%	4
HOG:E0286084	Mesangiospermae	3		66.7%	4
HOG:E0990849	Bacteria	1902		35.0%	3
HOG:E0315479	Embryophyta	35		22.9%	3
HOG:E0282950	Mesangiospermae	13		30.8%	3
HOG:E0782470	Eumetazoa	13		23.1%	3
HOG:E1027481	LUCA	120		74.2%	2
HOG:E0807957	Eukaryota	67		46.3%	2
HOG:E0993479	Bacteria	42		35.7%	2
HOG:E0314186	Embryophyta	24		79.2%	2
HOG:E0285522	Mesangiospermae	17		52.9%	2
HOG:E0827687	Eukaryota	9		55.6%	2
HOG:E0287213	Mesangiospermae	7		100.0%	2
HOG:E0821746	Eukaryota	6		66.7%	2
HOG:E0261202	fabids	5		40.0%	2
HOG:E0821676	Eukaryota	5		40.0%	2
HOG:E0306764	Spermatophyta	5		40.0%	2
HOG:E0829122	Eukaryota	4		50.0%	2

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